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Research Microscopy Solutions North America (English)
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Image courtesy of Dr. Henner Koch, RWTH University, Aachen, Germany
Neuron Tracing

Accelerate neuroscience research with advanced analysis

Proven algorithms, immersive VR environment and AI-assisted tools
Try ZEISS arivis Pro
  • Train custom AI segmentation in just a few clicks
  • Build flexible analysis pipelines to answer diverse neuroscience research questions
  • View and edit your results in an immersive VR environment
  • Scale up to thousands of images
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ZEISS ARIVIS PRO VR

A new neuron tracing workflow

A new advanced image analysis workflow for tracing neurons is now available for you. After building a flexible pipeline supported by AI-assisted advanced neuron tracing algorithms, you can proofread and edit your results in an immersive Virtual Reality (VR) environment. Watch this video to learn more.

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Neurons in microscopy image traced and color marked

Neuroscience: reveal neural complexity

From single neuron tracing to complete network analysis​

Explore neural complexity with ZEISS arivis's powerful, automated tools designed specifically for neuroscience research. Trace and analyze complete neuron morphologies, and quantify dendritic spines - even in large, 3D datasets from cleared tissue or whole brain imaging. The software's advanced algorithms and AI-driven workflows handle the intricate structures of the nervous system with precision, enabling discoveries that would be impossible with manual analysis. ​​

  • Automated 3D neuron tracing with state-of-the-art algorithms​
  • AI-assisted neuron tracing and dendritic spine detection
  • Large 3D dataset handling for whole brain and cleared tissue
  • Volume fusion for combining several sub volumes​
  • Comprehensive morphological measurements of neuronal features
  • Full integration into analysis workflows combining distance measurements and many more

Advanced analysis features available in ZEISS arivis Pro

  • End-to-end well plate analysis

    Set up, validate, and visualize entire well plate analyses locally, including feature extraction, data aggregation, and heatmap visualization.

  • Seamless scaling

    Effortlessly scale validated pipelines to arivis Hub for distributed processing across large datasets.

  • 3D analysis of complex samples

    Analyze complex 3D datasets at any scale with robust workflows for repeatable experiment setup and quick, reliable results.