ImmunoExplorers: Correlative and multimodal imaging of immune cells in human kidney biopsies using X-rays, light, and electrons. Image credits of Roufosse team/Collinson team/Duke team/Schwab team/Uhlmann team
ImmunoExplorers: Correlative and multimodal imaging of immune cells in human kidney biopsies using X-rays, light, and electrons. Image credits of Roufosse team/Collinson team/Duke team/Schwab team/Uhlmann team ImmunoExplorers: Correlative and multimodal imaging of immune cells in human kidney biopsies using X-rays, light, and electrons. Image credits of Roufosse team/Collinson team/Duke team/Schwab team/Uhlmann team

Symposium "From 3D Light to 3D Electron Microscopy“

Hosted at the Francis Crick Institute | London, UK
Abstract deadline: January 15th, 2026

Welcome to the 8th Edition of the Symposium

From 3D Light to 3D Electron Microscopy

We are thrilled to announce that the 8th edition of the symposium “From 3D Light to 3D Electron Microscopy” is hosted by the Electron Microscopy Science Technology Platform at the prestigious Francis Crick Institute in London, UK. This event is a collaborative effort between the Francis Crick Institute, EMBL Heidelberg, VIB Ghent, and ZEISS, bringing together leading experts and enthusiasts in the field.​

​The symposium will feature a rich program of scientific sessions that span a wide spectrum of correlative workflows, addressing various imaging modalities, sample preparation techniques, and data analysis strategies. Participants will also have the unique opportunity to engage in instrument workshops and dynamic round table discussions. You will discover just how accessible correlative microscopy has become and explore its applications in clinical research environments. ​

​We also warmly invite young scientists and those utilizing different imaging modalities beyond volume electron microscopy to join this event and learn more about the benefits from their peers. Knowledge and experience can be shared with your friends and other researchers in an inspiring and collaborative atmosphere.​

​Additionally, participants are encouraged to showcase their own scientific contributions through presentations selected from submitted abstracts or in short flash talks.​

​Don't miss this exciting opportunity to connect with fellow researchers and industry professionals, as we delve into the latest and emerging technologies in correlative microscopy, volume electron microscopy, and X-ray microscopy within the life sciences. Join us for an inspiring and collaborative experience that promises to enhance your understanding and application of these groundbreaking techniques! 

Speakers

Yoshiyuki Kubota​

Project researcher, EM team leader,
Division of Multisensory Integration Systems, National Institute for Physiological Sciences​Okazaki, Japan

Candice Roufosse

Clinical Reader Renal Pathology
Imperial College London, Department of Immunology and Inflammation
London, UK

Ana Laura Vinagre Costa de Sousa

Electron Microscopy Facility Head
Gulbenkian Institute for Molecular Medicine
Lisbon, Portugal

Asandile Mangali

Asandile Mangali (PhD candidate),
Neuro Research Group (Prof. Ben Loos's lab), Physiological Sciences, Stellenbosch University, South Africa

Tanmay Bharat

Programme Leader​ Structural Studies Division​ MRC Laboratory of Molecular Biology​
Cambridge, UK

Sven Klumpe

MBA/IMP, Fellow​ Research Institute of Molecular Pathology (IMP) and Institute of Molecular Biotechnology Austria (IMBA), Vienna BioCenter
Vienna, Austria

Nicolas Gueninchault​

Head of Field of Business, X-ray Microscopy
ZEISS Microscopy
Dublin, USA

Edoardo D'Imprima

Head of CLEM Core facility
Humanitas Research Hospital
and Humanitas University
Milano, Italy

Patricia Goggin

Clinical Scientist and Head of the
Biomedical Imaging Unit, University Hospital Southampton and
University of Southampton
Southampton, UK

Alexandra Kerbl

Postdoc, Department of Evolutionary Neurobiology, Centre for Organismal Studies (COS), Heidelberg University
Heidelberg, Germany
 

Harald Hess

Senior Group Leader HHMI
Janelia Research Campus​
Ashburn, USA

 

Program at a glance

Agenda overview and session details

Program overview

  • Program Item
    Title

    15:30 – 16:30 GMT

    Registration & Coffee & Snacks

    16:30 – 17:00 GMT

    Welcome

    Keynote Session, Chair: Lucy Collinson, The Francis Crick Institute, London

    17:00 – 17:45 GMT

    Keynote 1: Yoshiyuki Kubota

    Large Volume Electron Microscopy Reveals Synaptic Architecture of Cortical Circuits in the Primate Prefrontal Cortex

    17:45 – 18:30 GMT

    Keynote 2: Candice Roufosse

    A nanopathology platform for the prediction and early detection of kidney transplant rejection

    18:30 – 20:00 GMT

    Fingerfood & drinks @ The Crick

  • Program Item
    Title

    08:30 – 08:50 GMT

    Welcome Coffee

    09:00 – 09:15 GMT

    Welcome & Housekeeping

    09:15 – 09:45 GMT

    Ana Laura Vinagre Costa e Sousa

    TBC

    09:45 – 10:00 GMT

    Selected talk from abstracts

    10:00 – 10:15 GMT

    Selected talk from abstracts

    10:15 – 10:45 GMT

    Coffee Break

    10:45 – 11:15 GMT

    Asandile Mangali

    Increased environmental exposure to heavy metals in South African mining regions: A recipe for metal-induced neurotoxicity and mitochondrial dysfunction? 

    11:15 – 11:30 GMT

    Flash Talks

    11:30 – 13:00 GMT

    Workshop 1 – 4 / Panel Discussion 1

    13:00 – 14:00 GMT

    Lunch

    14:00 – 15:30 GMT

    Workshop 1 – 4 / Panel Discussion 2

    15:30 – 16:00 GMT

    Coffee Break

    16:00 – 16:30 GMT

    Tanmay Bharat

    Multi-scale, correlated imaging of multicellular specimens: from bacterial biofilms to eukaryotic infection

    16:30 – 17:00 GMT

    Sven Klumpe

    Cryo-(P)FIB development from unicellular to multicellular organisms

    17:00 – 17:15 GMT

    Selected talk from abstracts

    17:15 – 17:30 GMT

    Selected talk from abstracts

    18:30 – 21:00 GMT

    Conference Dinner

  • Program Item
    Title

    08:45 – 09:15 GMT

    Welcome Coffee

    09:15 – 09:45 GMT

    tbd

    09:45 – 10:00 GMT

    Selected talk from abstracts

    10:00 – 10:15 GMT

    Selected talk from abstracts

    10:15 – 10:45 GMT

    Coffee Break

    10:45 – 11:15 GMT

    Nicolas Gueninchault

    Elevating Life Sciences Imaging through X-ray Microscopy

    11:15 – 11:30 GMT

    Flash Talks

    11:30 – 13:00 GMT

    Workshop 1 – 4 / Panel Discussion 3

    13:00 – 14:00 GMT

    Lunch

    14:00 – 15:30 GMT

    Workshop 1 – 4 / Panel Discussion 4

    15:30 – 16:00 GMT

    Coffee Break

    16:00 – 16:30 GMT

    Edoardo D'Imprima

    The potential and challenges of Volume Electron Microscopy for clinical research

    16:30 – 17:00 GMT

    Patricia Goggin

    Bridging the Gap: Collaborative EM for Research and Clinical Impact

    17:00 – 17:15 GMT

    Selected talk from abstracts

    17:15 – 17:30 GMT

    Selected talk from abstracts

    17:30 – 18:30 GMT

    Drinks @ The Crick

  • Program Item
    Title

    08:45 – 09:15 GMT

    Welcome Coffee

    09:15 – 09:45 GMT

    Alexandra Kerbl

    Reconstructing organisms section by section - modular serial section electron microscopy to tackle whole-organism connectomics projects

    09:45 – 10:15 GMT

    Dominik Kutra

    Big data in ilastik

    10:15 – 10:30 GMT

    Selected talk from abstracts

    10:30 – 10:45 GMT

    Selected talk from abstracts

    10:45 – 11:15 GMT

    Coffee Break

    Closing Keynote Session, Chair:Lucy Collinson, The Francis Crick Institute, London

    11:15 – 12:00 GMT

    Harald Hess

    Larger Volume Imaging with Single and Multiple Electron Beams and Cryo-Super-Resolution Microscopy​

    12:00 – 12:15 GMT

    Closing Words

Session Details

  • Erin Tranfield

    Correlative microscopy is a powerful approach that bridges multiple imaging modalities to provide comprehensive insights into biological and material samples. While high-end instrumentation can enhance these workflows, impactful correlative microscopy does not always require the latest or most expensive tools. This session, Correlative Microscopy – Back to Basics, highlights the ingenuity and resourcefulness of researchers who have developed robust correlative methods using accessible, often standard equipment. By showcasing practical solutions and creative adaptations, we aim to empower institutes with limited resources to engage meaningfully in correlative imaging.​

    ​We especially welcome contributions from students and technical staff who have played a key role in establishing these workflows. Their hands-on experience and problem-solving approaches are invaluable to the broader microscopy community. Presenters will share their methods, challenges, and outcomes, fostering an open dialogue on how to maximize the potential of existing tools.​

    ​Join us to explore how simplicity can drive innovation, and how collaboration across disciplines and roles can elevate microscopy practices. Whether you're just starting out or refining established techniques, this session offers a platform to learn, share, and connect.  

  • Pippa Hawes

    The last few years have seen an exponential rise in the structure of macromolecules solved by cryo-EM, with continuing developments in both EM hardware and software enabling this growth. With this increase in knowledge comes the next generation of questions revolving around the location, interaction and function of these molecules in situ. To find the answers to these questions we must visualise the structures within the cellular environment at comparable resolution, so called in situ structural biology (ISSB). However, the progression from imaging a relatively ordered, homogenous system to pinpointing relevant detail within the chaos of the cellular environment is not smooth. The context that fluorescence microscopy and room temperature EM can bring, along with the existing experience within the cell biology field, provide exciting opportunities for structural biologists and cell biologists to work together. Cryo-EM, fluorescence microscopy and room temperature EM are complementary techniques which together provide a multi-scale, ‘multi-information’ workflow. In this session we welcome both structural biologists and cell biologists with the intent to start to normalise this joint approach to answering questions across life science research.

  • Elizabeth Duke

    X-rays have powerful penetration and can be used to acquire 3D data of from large volumes. When X-ray imaging is combined with the exquisite details that can be obtained from other imaging modalities such as volume electron microscopy and/or light microscopy then the scientific possibilities are potentially limitless. Using X-ray imaging to non-destructively identify the area(s) of scientific interest within a large sample such that they can be precisely targeted for imaging using other techniques to reveal additional insights highlights the power X-rays have in correlative worflows. In this session we will focus on projects where X-rays were used in partnership with other techniques resulting in the extension of our scientific understanding across a wide variety of topics. 

  • Yannick Schwab

    TBA

  • Paolo Ronchi

    The volume EM community is quickly growing and an increasing number of groups are pushing the field forward. New developments in all the aspects of volume EM are arising, from sample preparation to analysis and correlation with other imaging modalities.​

    This session will explore the state of the art of the vEM pipeline, including the recent efforts to further develop the methods. 

Workshops

  • Workshop Leads: ​

    Jenny Hounsome, The Francis Crick Institute, London, UK​
    Chris Peddie, The Francis Crick Institute, London, UK​
    Wei Guan, The Francis Crick Institute, London, UK​
    Paolo Ronchi, EMBL, Heidelberg, Germany​
    Sebastian M. Markert, Carl Zeiss Microscopy, Oberkochen, Germany

  • Workshop Leads: ​

    Jemima Burden, LMB/UCL, London, UK
    Ian White, LMB/UCL, London, UK​
    Anne Weston, The Francis Crick Institute, London, UK

  • Workshop Leads: ​

    Nicolo Vahrmeijer, University of Stellenbosch, Stellenbosch, South Africa​
    Dumisile Lumkwana, The Francis Crick Institute, London, UK​
    Asandile Managali, University of Stellenbosch, Stellenbosch, South Africa​
    Sunil Kumar, The Francis Crick Institute, London, UK

  • Workshop Leads: ​

    Martin Jones, The Francis Crick Institute, London, UK​
    Helen Spiers, The Francis Crick Institute, London, UK​
    Ya Zhou, The Francis Crick Institute, London, UK​
    Nathalie Braun, Carl Zeiss Microscopy, Oberkochen, Germany

Panel Discussions

  • Paul Verkade

    Scientific research is (should) never (be) done in isolation. By learning from each other and working together we can produce better data and advance our research much faster. This is especially true for the theme of the meeting; “From 3D Light to 3D Electron Microscopy” where different imaging modalities are integrated into a single workflow and we capitalise on the strengths of certain techniques to circumvent limitations in others. The different imaging modalities may however require specialised expertise in each area and no one researcher can be an expert in each area.​

    How do we ensure that we make use of each other expertise and what is needed to bring the different microscopy communities (e.g. live light, super resolution fluorescence, in vivo, in situ structural, volume LM and EM, X-ray, Data, and others) together but also the different biological disciplines using those imaging technologies. ​

    In this discussion session, we will explore how we best work together, what are the potential technical bottlenecks, and how do we break down barriers between communities. ​

    At the end of each session, the aim is to formulate some action points / ideas that could help improve on the way we work together and strengthen our community.  

  • Ana Laura Vinagre Costa a Sousa

    Correlative Light and Electron Microscopy is a powerful set of techniques, that help us explore and understand the biology under the samples in a more complete way. To do CLEM there are a few requisites that are essential and that can be done with advanced equipment. The question is - “can I still do CLEM without all the high-end tools?” - The answer is a resounding “Yes!”. ​

    In this discussion, we will approach accessible methods and can them be combined to perform CLEM. We will also give some “tips and tricks” on how to tackle even the hardest samples, with simpler tools. With creativity at the forefront, we’ll see how much is possible when resourcefulness meets microscopy.  

  • Anneke Kremer

    From niche technique to powerhouse workflow, volume correlative microscopy has come a long way. Today, correlative imaging workflows continue to evolve at the intersection of light and electron microscopy, offering increasingly sophisticated ways to explore biological structures in 3D. This round table invites participants to join an open discussion on where the field is heading—from emerging technologies and workflow integration to data analysis and accessibility. Will freezing samples and imaging under cryo-conditions become the gold standard, or does plastic embedding still have a future? Whether you're pioneering new methods or navigating daily imaging challenges, your insights are key to shaping the next chapter of correlative microscopy. Let’s explore what’s next—together.​

  • Patricia Goggin

    Imaging human tissue presents a unique set of challenges that span biological complexity, technical limitations, and translational relevance. From sample preparation to data interpretation, researchers, clinicians and pathologists must navigate issues such as tissue heterogeneity, preservation of ultrastructure, and the integration of multimodal imaging data. This discussion aims to explore these challenges through the lens of collaborative efforts between the clinical and research environments, highlighting how advances in electron microscopy and correlative imaging can help to bridge gaps in understanding disease mechanisms and improving diagnostic precision. We invite participants to share insights, experiences, and strategies that can help overcome current limitations and shape the future of human tissue imaging and to look at challenges and translational opportunities that could be more effectively addressed by working together to advance cellular pathology using EM methods.

Location To Get There

The Crick is easily accessible by train, tube and bus. ​
Plan your route with the Transport for London journey planner

How to get to the Francis Crick Institute? ​
The venue is accessible through multiple transport options, ensuring a smooth and reliable journey regardless of how you choose to travel. Whether you arrive by tube, bus, car, train, or plane, each route offers clear connections that bring you directly to the area.

For more information in finding your way to the venue, click the link button:

Hotels

Recommended Hotels in walking distance to the Francis Crick Institute, however, there are numerous other hotels in this region

Organizing Commitee

Lucy Collinson

Head of Electron Microscopy,
The Francis Crick Institute,
London, UK
 

Pippa Hawes

Deputy Lead EM STP,
The Francis Crick Institute
London, UK
 

Yannick Schwab

Team Leader and Head of Electron Microscopy Core Facility EMBL
Heidelberg, Germany

Paolo Ronchi

Scientist EMBL
Heidelberg, Germany

 

Erin Tranfield

Head of the VIB BioImaging Core - Ghent VIB-UGent Center for Inflammation Research,
Ghent, Belgium

Anneke Kremer

Microscopy Specialist VIB Bioimaging Core Ghent VIB-UGent Center for Inflammation Research, Ghent, Belgium

Alexandra Elli

Solution Manager EM and XRM in Life Sciences Carl Zeiss Microscopy,
Jena, Germany

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London, UK | 22-25 March 2026

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