Institute for Stroke and Dementia Research (ISD)

Seeing Beyond

3D and 4D Image Analysis

Turn complex 3D and 4D microscopy data into reproducible insights and compelling visualizations

Bring your own datasets and discover practical approaches for analysing complex 3D and 4D microscopy data. In this hands-on workshop, you'll explore image analysis tools for segmentation, tracking, quantification, and visualization, while discussing common workflow challenges and how to overcome them.

Learn how to combine tools effectively, improve reproducibility, and create compelling visualizations and animations. Leave with actionable workflows and new strategies to analyse and present your data with greater confidence and impact.

 

📅 Workshop | November 23, 2026 | Key Learnings

  • Evaluate the strengths and limitations of different 3D and 4D image analysis tools.
  • Identify bottlenecks in your current workflows and learn practical strategies to address them.
  • Build reproducible workflows by combining tools to create compelling visualizations and animations of your data

Agenda

Time

10 AM

Registration, Snacks and Networking

10.30 AM

Welcome and Introduction to ZEISS

10.45 AM

Choosing the Right Tool for the Job: From Routine Image Analysis to Advanced 4D Workflows
Marion Lang, ZEISS

11.15 AM

User Case Studies in Image Analysis

12 PM

Lunch

1 PM

2-hour practical session:

AI-powered image analysis with ZEISS ZEN
Matthias Gaenge, ZEISS
Optional: Bring your own datasets.

Advanced AI-powered image analysis with ZEISS arivis
Noemi Castroviejo Jimenez, ZEISS

3.15 PM

2-hour practical session:

AI-powered image analysis with ZEISS ZEN
Matthias Gaenge, ZEISS
Optional: Bring your own datasets.

Advanced AI-powered image analysis with ZEISS arivis
Noemi Castroviejo Jimenez, ZEISS

5.15 PM

Workshop conclusion

Location

Institute for Stroke and Dementia Research (ISD)

Campus Großhadern Feodor-Lynen-Str. 17, Seminar Room 81377 Munich Deutschland

Registration

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