Episode 6: A Focus on Neuron Tracing
How to Quantify Neurons and Trace Tree-Like Structures
ZEISS arivis
A Focus on Neuron Tracing
The sixth and last video in this tutorial series to teach microscopists how to conduct 3D image analysis with a focus on cutting-edge algorithms for neuron tracing.
In this training video tutorial, Dr. Delisa Garcia demonstrates how to quantify neurons and trace tree-like structures. She starts with detailing different segmentation approaches and tools to segment the soma, followed by an introduction to two proven state-of-the-art neuron tracing algorithms, and closes with tips regarding trace editing.
Key Learnings:
- Threshold-Based Reconstructor
- Probabilistic Reconstructor
- Trace editing
Webinar
An Introduction to Advanced and 3D Image Analysis with ZEISS arivis Pro
Dr. Delisa Garcia explains the main functions of the ZEISS arivis Pro software, so you can start your own automated, end-to-end image analysis pipelines with ease. In just six sessions, you will learn enough about Advanced and 3D image analysis - basic principles, tools and best practices - to take your image analysis skills to the next level.
Topics such as data import and result export, 3D rendering, and segmentation types will get you on the right track. Explore various processing tools, measurements, relationship quantification, neuron tracing and object tracking. By learning how to implement AI models and other advanced operations into your pipeline, you will become an expert in image analysis with ZEISS arivis Pro in no time.