Image of ZEISS Axioscan 7 digital slide scanner

Digital Slide Scanner

ZEISS Axioscan 7

Discover high-performance digital slide scanning tailored to your application needs. Whether your focus is spatial biology at scale, life science research, clinical applications or geology, the Axioscan 7 slide scanning microscope brings you advanced automation capabilities and exceptional image quality.

  • Automated High-Speed Scanning

    Set up your task effortlessly and digitize up to 100 slides in a single run.

  • Exceptional Image Quality

    Digitize your slides with consistent quality across a variety of imaging modes.

  • Reliable 24/7 Operation

    Enjoy extended, uninterrupted digitization of many similar slides or mixed applications.

Slide Scanning Solutions for Your Field of Application

ZEISS Axioscan 7 configurations are designed to meet your unique requirements.

Paraffin-embedded mouse kidney. Sample courtesy: Florian Gembardt,  University Clinic Carl­Gustav Carus Dresden, Germany
Paraffin-embedded mouse kidney. Sample courtesy: Florian Gembardt,  University Clinic Carl­Gustav Carus Dresden, Germany

Axioscan 7

Scanning performance combined with application freedom

  • Benefit from application flexibility in a multi-user environment.
  • Switch rapidly between fluorescence, brightfield and polarization.
  • Get research-grade data quality for demanding fluorescence applications.
  • Use powerful ZEN software to access many more processing and analysis functions.

Axioscan 7 spatial biology

Scalable multipex imaging for routine applications

  • Speed up multiplex imaging of up to eight fluorescence stained biomarkers.
  • Benefit from solutions for robust, automated tissue detection and hyperplex cyclic imaging assays.
  • Get an optimized configuration for superior inter-day and inter-device reproducibility.
  • Choose from complementary software offerings for lab-automation, LIMS integration and AI-based image analysis.
Human tonsils in fluorescence contrast, Opal Polaris 7-color automation IHC kit
Human tonsils in fluorescence contrast, Opal Polaris 7-color automation IHC kit

Axioscan 7 clinical

Certified digital slide scanner for clinical routine and research

  • Perform clinical diagnosis with this IVDR certified pathology scanner.
  • Get high quality images for diverse sample types.
  • Scan your WSI, from histopathology to cytology.
  • Go beyond routine diagnostics in brightfield to clinical research.
Multichannel acquisition and machine learning segmentation of Berea Sandstone.
Multichannel acquisition and machine learning segmentation of Berea Sandstone.

Axioscan 7 geology

Thin section slide scanning for digitization of petrography data

  • Digitize geologic collections quickly.
  • Generate complete petrographic data.
  • Collaborate remotely across borders. 
Axioscan 7
Axioscan 7 spatial biology
Axioscan 7 clinical
Axioscan 7 geology

Slide formats

12 / 100 slides
1x3’’, 2x3’’, 4x3’’

100 slides
1x3’’

100 slides
1x3’’, 2x3’’, 4x3’’

12 / 100 slides
1x3’’, 2x3’’, 4x3’’, GEO format

Contrasting techniques

Brightfield, fluorescence, circular polarization, crossed linear polarization, TIE (transport of intensity equation)

Brightfield, fluorescence

Brightfield, fluorescence, circular polarization, TIE (transport of intensity equation)

Brightfield, fluorescence, circular polarization, crossed linear polarization, TIE (transport of intensity equation)

Objectives

Choose from 14 objectives

2 objectives

2 objectives; choose from 4 additional objectives

Choose from 14 objectives

Recommended cameras

Axiocam 705 color, Axiocam 712 mono, Hamamatsu Orca Flash 4.0

Axiocam 820 mono w/ 0.8x adapter

Axiocam 705 color, Axiocam 712 mono

Axiocam 705 color, Axiocam 712 mono, Hamamatsu Orca Flash 4.0

Image analysis/ workflow integration

ZEN or any third-party solution

Protocol selection and scan operation via SlideStream software; coregistration of multiple staining rounds; Mindpeak AI based image analysis

Integration into IMS / PACS via ZEISS Solutions Lab and Dicom converter (Note: This solution is not In vitro diagnostica)

ZEN or any third-party solution

Certification for clinical diagnosis

– 

IVDR

– 

  • Scanning Performance Combined with Application Freedom

    Axioscan 7 combines qualities that you would never expect to find in a slide scanner—things like high-speed digitization and outstanding image quality, plus an unrivaled variety of imaging modes—all wrapped up in a fully automated and easy to operate system. Even the most challenging research tasks are supported by powerful hardware and perfectly featured software. Give your imaging facility users the ability to capture virtual slides quickly and with consistently high quality, whether their applications call for brightfield, fluorescence or polarization imaging.

    A Variety of Super-fast Brightfield Imaging Modes

    A newly designed condenser with its motorized modulator disk lets you switch automatically between different brightfield imaging modes to adapt to the different requirements of your applications. This opens up a whole new range of experiments and modality combinations, with:

    • dramatically improved scan speeds in all brightfield imaging modes
    • better sample detection and focusing
    • new phase and relief contrast options
    • circular and linear polarization now fully supported.
    Mouse kidney wound healing assay, stained with sirius red, brightfield. Sample courtesy: Alexander Lomow, Evotec
    Mouse kidney wound healing assay, stained with sirius red, cross linear polarization. Sample courtesy: Alexander Lomow, Evotec

    Reproducible Image Quality

    ZEISS Axioscan 7 offers reliably reproducible image quality, no matter whether you repeat your imaging task after a day, a week, a month or even on a different machine.

    Paraffin-embedded mouse kidneys from healthy wildtype animals (12 weeks). Nephrin stained with Cy3. PCNA APC (FarRed) and DAPI as counterstaining. Imaged with 20× NA 0.8 objective.

    Paraffin-embedded mouse kidneys from healthy wildtype animals (12 weeks). Nephrin stained with Cy3. PCNA APC (FarRed) and DAPI as counterstaining. Imaged with 20× NA 0.8 objective.

    TIE Contrast

    Improved Detection. Better Focusing. More Context.

    Introducing Transfer of Intensity Equation (TIE), the new contrast method for contrast generation in transparent samples. Now you can record the interaction of a narrow cone of light with your sample’s structures in three images: one in focus and two out of focus above and below the focal plane. From these three images, the phase information for the central plane is automatically extracted. Continuous acquisition in the z dimension, combined with flash illumination and GPU-based fast image processing, enables very fast delivery of the final contrast images. Present this as either phase contrast or DIC-like relief contrast: it’s your choice.

    TIE contrast is an excellent tool that supports your experiments when working with sensitive fluorescent dyes:

    • Detect transparent tissues with little to no contrast in regular brightfield mode.
    • Speed up the subsequent fluorescence imaging process with very fast flash-based focusing.
    • Protect your sensitive dyes from bleaching during focusing by using the lowest light doses.
    • Bring your fluorescent labels into context easily by applying additional contrast information.
    Solanum tuberosum – potatoe starch, 20x Plan-Apochromat 0.8; A) TIE phase contrast, B) TIE relief contrast, C) Brightfield
    Solanum tuberosum – potatoe starch, 20x Plan-Apochromat 0.8; A) TIE phase contrast, B) TIE relief contrast, C) Brightfield

    Solanum tuberosum – potatoe starch, 20x Plan-Apochromat 0.8; A) TIE phase contrast, B) TIE relief contrast, C) Brightfield

    Solanum tuberosum – potatoe starch, 20x Plan-Apochromat 0.8; A) TIE phase contrast, B) TIE relief contrast, C) Brightfield

  • Workflow Automation for Multiplexed Spatial Profiling at Scale

    By leveraging multiplex immunofluorescence (mIF) staining with multiple biomarkers, spatial biology allows simultaneous visualization and quantification of numerous proteins within a single tissue section. This enables detailed analysis of cell presence, abundance, spatial distribution and cell-to-cell interactions.

    Load ZEISS Axioscan 7 spatial biology with 100 samples and scan them all in less than a day with unprecedented speed, fully automated and supported by AI-enabled tissue detection and high dynamic range imaging. Analyze up to eight biomarkers at the same time and generate highly reproducible data that you can rely on. We offer complimentary service solutions to integrate streamlined workflow solutions into pre-existing LIMS and IMS systems.

    Non-small Cell Lung Cancer (NSCLC) Tissue

    The UltiMapper I/O PD-L1 kit from Ultivue looks at whether a tumor is ‘hot‘ or ’cold’. It also addresses whether the tumor will respond to immune checkpoint inhibition because of a high immune filtrate (hot in contrast to tumors with low immune infiltrates ( ‘cold tumors’ or non-T-cell-inflamed cancers). It does this by exploring multiple cell phenotypes such as cytotoxic immune cells (CD8), immunosuppressive macrophages (Markers CD68, PD-L1) or immune evading tumor cells (Markers CK, PD-L1).

    Please note. The following images represent research content. ZEISS explicitly excludes the possibility of making a diagnosis or recommending treatment for possibly affected patients on the basis of the information generated with the Axioscan 7 spatial biology slide scanner.

    NSCLC tissue stained with UltiMapper I/O PD-L1 kit.
    NSCLC tissue stained with UltiMapper I/O PD-L1 kit.

    NSCLC tissue stained with UltiMapper I/O PD-L1 kit.

    NSCLC tissue stained with UltiMapper I/O PD-L1 kit. Picture detail.
    NSCLC tissue stained with UltiMapper I/O PD-L1 kit. Picture detail.

    NSCLC tissue stained with UltiMapper I/O PD-L1 kit. Picture detail.

  • Your Certified Digital Slide Scanner for Diagnostics and Clinical Research

    ZEISS Axioscan 7 clinical is your pathology slide scanner of choice when you want to go beyond routine diagnostics. This IVD*-approved system makes it easy to acquire your WSI in brightfield, fluorescence and even polarization contrast.

    (*acc. to IVDR)

    Axioscan 7 product accessory detail

    Stay Flexible in Your Samples

    Use various sample types for diagnostics, incl. those from histopathology and cytology, as well as samples of varying thickness or formats.

    WSI of tissue.
    WSI of tissue.

    WSI of tissue.

    WSI of tissue.

    Get Sharp Images

    With ZEISS Axioscan 7 clinical you benefit from outstanding image quality. Get sharp, color-calibrated, and detail-rich images – even at the slide edges.

    Tissue image acquired with 10x objective
    Tissue image acquired with 20x objective
    Comparison of image acquired with 10x vs. 20x objective.

    Speed up. Costs down.

    Scanning thousands of slides takes up a lot of storage space. By choosing lower magnifications, you’re also choosing lower file size. That will save valuable disc space, scanning time and costs.

    Tissue section, H&E staining
    Tissue section, H&E staining

    Tissue section, H&E staining

    Tissue section, H&E staining
    Tissue section, H&E staining

    Tissue section, H&E staining

    Tissue microarray
    Tissue microarray

    Tissue microarray

    Colon sample from a patient with Crohn’s disease, imaged with 20× NA 0.8 objective. Green: Cox-1 in Tuft cells in the epithelium – the sensory cells of the gut – and cells in the lamina propria connective tissue. Red: CD 163 – a macrophage marker. This image represents research content. ZEISS explicitly excludes the possibility of making a diagnosis or recommending treatment for possibly affected patients on the basis of the information generated with an Axioscan 7 slide scanner.
    Colon sample from a patient with Crohn’s disease, imaged with 20× NA 0.8 objective. Green: Cox-1 in Tuft cells in the epithelium – the sensory cells of the gut – and cells in the lamina propria connective tissue. Red: CD 163 – a macrophage marker. This image represents research content. ZEISS explicitly excludes the possibility of making a diagnosis or recommending treatment for possibly affected patients on the basis of the information generated with an Axioscan 7 slide scanner.

    Colon sample from a patient with Crohn’s disease, imaged with 20× NA 0.8 objective. Green: Cox-1 in Tuft cells in the epithelium – the sensory cells of the gut – and cells in the lamina propria connective tissue. Red: CD 163 – a macrophage marker. This image represents research content. ZEISS explicitly excludes the possibility of making a diagnosis or recommending treatment for possibly affected patients on the basis of the information generated with an Axioscan 7 slide scanner.

    Colon sample from a patient with Crohn’s disease, imaged with 20× NA 0.8 objective. Green: Cox-1 in Tuft cells in the epithelium – the sensory cells of the gut – and cells in the lamina propria connective tissue. Red: CD 163 – a macrophage marker. This image represents research content. ZEISS explicitly excludes the possibility of making a diagnosis or recommending treatment for possibly affected patients on the basis of the information generated with an Axioscan 7 slide scanner.

    Human tonsils in fluorescence contrast, Opal Polaris 7-color automation IHC kit
    Human tonsils in fluorescence contrast, Opal Polaris 7-color automation IHC kit

    Human tonsils in fluorescence contrast, Opal Polaris 7-color automation IHC kit.

    Lung Squamous Carcinoma tissue mIF staining for CD4/CD8/CD20/PD-1/CTLA-4/FoxP3/DAPI using Opal 7-color kit
    Lung Squamous Carcinoma tissue mIF staining for CD4/CD8/CD20/PD-1/CTLA-4/FoxP3/DAPI using Opal 7-color kit

    Lung Squamous Carcinoma tissue mIF staining for CD4/CD8/CD20/PD-1/CTLA-4/FoxP3/DAPI using Opal 7-color kit

    Courtesy of Y. S. DeRose, HCI University of Utah

  • Thin Section Slide Scanning for Digitization of Petrography Data

    Embrace digitalization with Axioscan 7 and you will not only create high-quality digitized petrography data efficiently. You’ll also gain the advantage of easy data sharing and seamless integration into your geological workflows. With AI-integrated analysis and remote collaboration capabilities, Axioscan 7 empowers geologists and researchers to work together seamlessly from anywhere in the world. Maximize the benefits of modern technology in quantitative petrography and automated analytics.

    Multi-channel Acquisition

    Use different forms of polarization illumination to highlight different features. Plane polarized light (PPL) shows the overall crystal color, habit and pleochroism. Crossed polarized light (XPL) at multiple orientations lets you assess the extinction angle and birefringence. Circular polarization allows maximum birefringence to be observed regardless of grain orientation. All channels are aligned using powerful computational algorithms during acquisition, making the resulting data perfect for subsequent segmentation and analysis.

    Circular Polarization
    Circular Polarization

    Circular Polarization

    Cross Polarized Light (XPL)
    Cross Polarized Light (XPL)

    Cross Polarized Light (XPL)

    Plane Polarized Light (PPL)
    Plane Polarized Light (PPL)

    Plane Polarized Light (PPL)

    The combination of ZEISS Axioscan 7 and ZEISS AI-based segmentation creates the Petrography Analysis Toolbox, or PetPAT
    The combination of ZEISS Axioscan 7 and ZEISS AI-based segmentation creates the Petrography Analysis Toolbox, or PetPAT

    Mineral Phase Analysis

    Combine ZEISS Axioscan 7 with ZEISS AI-based segmentation to enable automated analysis across large numbers of samples. Easy machine learning segmentation lets you label each mineral phase of interest, using an intuitive painting interface while the software builds a model of the mineralogy across your entire sample.

    Automated machine-learning based mineral classification using a single ZEN Intellesis model, applied on two sandstone samples
    Automated machine-learning based mineral classification using a single ZEN Intellesis model, applied on two sandstone samples

    AI-Based Mineral Classification

    Automated machine learning-based mineral classification uses a single ZEN Intellesis model, applied here on two sandstone samples.

    Both modal mineralogy and pore / grain sizes can be measured and automatically reported.

    Full thin-section polarization images. This kyanite-bearing schist has been imaged as part of a digital thin section collection.
    Full thin-section polarization images. This kyanite-bearing schist has been imaged as part of a digital thin section collection.

    PPL-to-XPL

    Full thin-section polarization images. This kyanite-bearing schist has been imaged as part of a digital thin section collection. The upper image shows a single PPL orientation while the lower view shows the capture of the thin section in multiple XPL orientations. This lets a simulated stage rotation observe and analyze extinction angles with the full XPL variation over 90°.

    Close up of a single biotite grain within a granite sample. Sample has been imaged in multiple PPL orientations in order to observe the full range of pleochrosim as the sample is rotated through 180° relative to the polarizer.
    Close up of a single biotite grain within a granite sample. Sample has been imaged in multiple PPL orientations in order to observe the full range of pleochrosim as the sample is rotated through 180° relative to the polarizer.

    PPL-to-Pleochroism

    Close up of a single biotite grain within a granite sample. Sample has been imaged in multiple PPL orientations in order to observe the full range of pleochroism as the sample is rotated through 180° relative to the polarizer.

    Use ZEN Connect to intuitively build correlative projects that start with the data-rich, light microscopy environment from ZEISS Axioscan 7 Geo
    Use ZEN Connect to intuitively build correlative projects that start with the data-rich, light microscopy environment from ZEISS Axioscan 7 Geo

    Correlative Microscopy

    Use ZEN Connect to build intuitive correlative projects that start with the data-rich light microscopy environment from ZEISS Axioscan 7 geology. Here additional phase and geochemical information from ZEISS Mineralogic becomes the next step in a petrological investigation. The sample shown here is a granulite facies metagabbro from near Scourie more, Northwest Scotland.

    The powerful PetPAT orientation analysis package turns entire thin sections into mineral orientation maps
    The powerful PetPAT orientation analysis package turns entire thin sections into mineral orientation maps

    Mineral Orientation Analysis

    The optional PetPAT orientation analysis package turns entire thin sections into powerful mineral orientation maps. Use these datasets in conjunction with mineral segmentation for detailed studies and also to generate grain size distribution data.

    • Use XPL image stacks to calculate the angle at which any given pixel is at maximum or minimum luminance.
    • Then use these data to allow the entire thin section to be mapped for orientation of mineral grains in transmitted light.

Downloads

    • ZEISS Axioscan 7

      Your High-performance Slide Scanner for Fluorescence, Brightfield and Polarization

      4 MB
    • ZEISS Axioscan 7 geology

      Your Unique Automated Petrographic Microscope for Digitization, Quantification and Collaboration

      8 MB
    • The Petrography Analysis Toolbox (PetPAT)

      Quantitative analytics for light microscopy – ZEISS Axioscan 7 Geo

      2 MB
    • ZEISS Axioscan 7 geology

      Discover the new possibilities of automated petrography

      932 KB


    • ZEISS Microscopy Solutions for Oil & Gas

      Understanding reservoir behavior with pore scale analysis

      7 MB


Visit the ZEISS Download Center for available translations and further manuals.

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